About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3997955_3998288_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3997955 - 3998288
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCTGCTCTGACT
Flanking Amino Acid:
KKERDNGYHVDRVDFLQLMV
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
73.2
37.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
31.6
-2.1
2.9
39.6
39.8
Minor BPS
55.7
0.26
1.8
75.39
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006077
3991321 - 4004086
12766