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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3998417_3998926_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3998417 - 3998926
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TGAGCTATAATA
Flanking Amino Acid:
SFLNPVFLLLVLFPFVVPVL
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
67.7
37.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
83
0.74
0.7
81.3
23.8
Minor 5ss
38.3
-1.3
3
50.3
46.3
Minor BPS
51
0.03
1.7
61.69
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006077
3991321 - 4004086
12766