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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3999911_4000385_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3999911 - 4000385
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
TCTCCTCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTCTCCTCATGC
Flanking Amino Acid:
ECYTNFTNRRNFRLNGILES
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
39.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
78.6
0.64
0.8
73.5
30.3
Minor 5ss
33
-1.9
3.1
36.5
40.9
Minor BPS
49.5
-0
2.1
66.27
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006077
3991321 - 4004086
12766