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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4000486_4001765_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4000486 - 4001765
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
ATGGACTGACCG
Flanking Amino Acid:
MCFEKYGKIWGIFDGRQPLL
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.3
32.5
Major BPS
55.9
0.15
1.2
49
38
Major PPT
69
0.43
0.9
68.7
37.2
Minor 5ss
38.9
-1.3
2.9
44.3
43.6
Minor BPS
42.9
-0.6
2
47.46
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006077
3991321 - 4004086
12766