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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4001819_4002931_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4001819 - 4002931
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCACTCACAAAC
Flanking Amino Acid:
FLGTLLEYRHGFLNFDQMCF
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
43.3
-0.5
1.8
51.27
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006077
3991321 - 4004086
12766