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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4023689_4023917_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4023689 - 4023917
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTATGTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAC
U12 Branch Point Sequence:
GTATCCTATACA
Flanking Amino Acid:
KSTFSKKNGTRSPPRPSPGG
Intron Amino Acid Position:
1892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
65
0.37
1
73
31.6
Major PPT
72.7
0.51
0.9
65.3
40.9
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
55.7
0.17
2
69.09
42.7

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140