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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4026170_4028722_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4026170 - 4028722
Intron Length:
2553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAG
5'SS Class:
major
3'SS Sequence:
TTTGCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAG
U12 Branch Point Sequence:
TTGTCTTTTGCT
Flanking Amino Acid:
EPSVPSVAVSAQIEAPFYEE
Intron Amino Acid Position:
1806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.7
41.1
Major BPS
47.1
-0.1
1.7
55.4
48.1
Major PPT
87.6
0.84
0.7
85.1
29.7
Minor 5ss
38.8
-1.3
2.8
48.4
47.4
Minor BPS
45.3
-0.2
3.6
79.44
43

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140