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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4036772_4037573_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4036772 - 4037573
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTCATTTCATC
Flanking Amino Acid:
QANVTAGPAEGSPGSPQEIL
Intron Amino Acid Position:
1709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.8
0.74
0.8
74.1
36.3
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
47.8
-0.1
1.9
61.34
38.1

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140