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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4042020_4043448_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4042020 - 4043448
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAATACTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TGTGCTAAAACA
Flanking Amino Acid:
SQNGNIQGYKIYYWESDVQN
Intron Amino Acid Position:
1547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
75
40.8
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
71
0.47
0.9
65.8
34.8
Minor 5ss
27.6
-2.6
4.2
48
47.5
Minor BPS
48.1
-0.1
2
64.6
42

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140