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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4043565_4058175_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4043565 - 4058175
Intron Length:
14611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCACTATTAATT
Flanking Amino Acid:
TPVEVFVGEAAPAMAPQNIQ
Intron Amino Acid Position:
1508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.9
0.61
0.7
69.3
31.4
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
57.2
0.31
1.6
71.07
39.9

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140