Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4058278_4060190_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4058278 - 4060190

Intron Length:

1913

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

TTTGCATTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TAATATTTAATA

Flanking Amino Acid:

SSALTTYELTQLKKYKRYEV

Intron Amino Acid Position:

1474

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

1.3

35.3

Major BPS

90.7

1.01

0.7

19.9

Major PPT

84.6

0.78

0.8

81.6

Minor 5ss

34.4

-1.8

3.1

40.8

38.7

Minor BPS

65.2

0.47

1.4

70.48

35.4

Associated Gene:

Gene:

SDK1

Ensembl Gene ID:

ENSAPLG00000004608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004908

4016955 - 4400094

383140