Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4060251_4062116_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4060251 - 4062116

Intron Length:

1866

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGCCTA

5'SS Class:

major

3'SS Sequence:

TTACCCTGAATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

TTACCCTGAATA

Flanking Amino Acid:

NPSALRAELTPQSSFKTVNS

Intron Amino Acid Position:

1454

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

1.3

68.9

43.8

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

62.1

0.27

58.7

36.9

Minor 5ss

42.8

-0.8

3.1

55.8

Minor BPS

68.1

0.57

1.4

75.2

35.6

Associated Gene:

Gene:

SDK1

Ensembl Gene ID:

ENSAPLG00000004608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004908

4016955 - 4400094

383140