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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4062253_4067080_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4062253 - 4067080
Intron Length:
4828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GAATGTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
ATGTCTTAACAA
Flanking Amino Acid:
TTSSVLVQWQPPKAESLNGL
Intron Amino Acid Position:
1409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
71.3
0.48
1
66.3
44.7
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
46.4
-0.2
2
58.28
41.8

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140