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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4075362_4083284_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4075362 - 4083284
Intron Length:
7923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
GCTGTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
CTTCTGTTGACG
Flanking Amino Acid:
PPEEPNGVILGYQIAYRLAS
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
60.8
44.4
Major BPS
72
0.55
1
71.8
31.4
Major PPT
71.1
0.47
1
66
44.1
Minor 5ss
29.4
-2.4
3.3
30.1
42.9
Minor BPS
48.5
-0.2
2.2
59.21
43

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140