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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4083384_4085380_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4083384 - 4085380
Intron Length:
1997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTAGCATGATCT
Flanking Amino Acid:
PPVIERTKDDAPGPPVRLVF
Intron Amino Acid Position:
1185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
44.7
-0.3
2
62.91
46.5

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140