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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4085571_4085835_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4085571 - 4085835
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
CCTTCCATATTC
Flanking Amino Acid:
EQNGLVLGYKILFKAKDLDS
Intron Amino Acid Position:
1122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
83.3
0.75
0.8
76.8
37.1
Minor 5ss
44.8
-0.6
2.6
56.4
48
Minor BPS
50.4
-0
1.9
62.7
43.3

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140