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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4085909_4095087_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4085909 - 4095087
Intron Length:
9179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTGAAGCTGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGAGAAT
U12 Branch Point Sequence:
TCCTCCTGAGAA
Flanking Amino Acid:
VPNLTPYTHYSSTQILLTWS
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
49.1
-0
1.5
58
45.4
Major PPT
44.4
-0.3
1.7
46.5
45.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
49.6
-0
1.8
61.51
44.3

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140