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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4095198_4102784_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4095198 - 4102784
Intron Length:
7587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTGTTCTTACCT
Flanking Amino Acid:
SICKWIVEGQVGVLGDEEEW
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
88.1
0.86
0.8
84.3
29.6
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
72.7
0.79
1.6
87.1
39

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140