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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4102907_4104705_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4102907 - 4104705
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAA
5'SS Class:
major
3'SS Sequence:
CTCTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTCCACCACT
Flanking Amino Acid:
SSTISSGVPPELPGAPSNLV
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.2
75.3
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.2
0.93
0.6
87.3
23.1
Minor 5ss
30
-2.3
2.7
33.5
41.8
Minor BPS
50.7
0.1
2.2
80.02
41.5

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140