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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4116395_4124330_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4116395 - 4124330
Intron Length:
7936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGACTGGGAGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTGCCTGACT
Flanking Amino Acid:
RPVTEYTLQGVPTAPPQNVQ
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
52.5
0.06
1.2
47.1
44.6
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
56
0.27
2.1
79.95
42.3

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140