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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4129107_4135778_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4129107 - 4135778
Intron Length:
6672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTATTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TCTCTCTCAAAT
Flanking Amino Acid:
LYYMVELSENNSPWKVHLSN
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
72.6
0.51
1
67.3
38.5
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
57.5
0.31
1.7
74.8
41.6

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140