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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4148811_4150011_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4148811 - 4150011
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTTCATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGTTTTTTAAAT
Flanking Amino Acid:
IQTYTYLDVTNIKPAFIQPP
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.5
36.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
78.8
34.4
Minor 5ss
31.5
-2.1
2.7
35
35.9
Minor BPS
69.2
0.68
1.3
80.03
35.4

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140