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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4150207_4156064_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4150207 - 4156064
Intron Length:
5858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
KDVDILCQAMGVPIPSLVWY
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140