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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4156149_4164873_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4156149 - 4164873
Intron Length:
8725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CTTTGTTTACTT
Flanking Amino Acid:
ARANAFLSIIEPPYFTAEPE
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
77
0.61
1
78.5
33.7
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
53.1
0.18
2
74.65
43.4

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140