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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4165065_4166060_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4165065 - 4166060
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TTAACCTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTTGTTTAACC
Flanking Amino Acid:
EITLECVANARPVEKLSMTW
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
65.8
0.36
1
62.5
39.3
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
75.7
0.79
1.7
85.93
32.4

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140