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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4281397_4285271_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4281397 - 4285271
Intron Length:
3875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTGTCTTTACA
Flanking Amino Acid:
LQRRSEVQVAYMGNFMDTNQ
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
71.7
40.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
44.8
-0.6
3.1
61.8
43.3
Minor BPS
66.2
0.5
1.7
78.67
37.8

Associated Gene:

Gene:
SDK1
Ensembl Gene ID:
ENSAPLG00000004608
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004908
4016955 - 4400094
383140