Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4285379_4290500_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4285379 - 4290500

Intron Length:

5122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAATAAA

5'SS Class:

major

3'SS Sequence:

TTCTGTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TAATTCTGCACT

Flanking Amino Acid:

SEITAYSSEYKYIIPALQRS

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

79.4

28.6

Major BPS

84.4

0.85

1.1

34.5

Major PPT

85.9

0.81

0.8

80.6

31.5

Minor 5ss

36.1

-1.6

2.8

39.1

Minor BPS

53.8

0.2

1.9

74.78

41.5

Associated Gene:

Gene:

SDK1

Ensembl Gene ID:

ENSAPLG00000004608

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004908

4016955 - 4400094

383140