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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4409491_4412868_F

Intron Information:

Intron Rank:
147108
Intron Class:
major
Intron Phase:
Intron Coordinates:
4409491 - 4412868
Intron Length:
3378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
100
1.24
0.5
100
0
Major PPT
85.1
0.79
0.7
81.1
30.5
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029221
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040432
4403197 - 4412931
9735