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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4456135_4456689_F

Intron Information:

Intron Rank:
132308
Intron Class:
major
Intron Phase:
Intron Coordinates:
4456135 - 4456689
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
GGTGCTGTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
79.7
35.4
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
86.9
0.83
0.8
84.7
35.8
Minor 5ss
43
-0.8
2.6
51.2
45.5
Minor BPS
47.1
-0.1
2.2
66.44
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021078
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020280
4456052 - 4458131
2080