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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4456780_4457972_F

Intron Information:

Intron Rank:
132309
Intron Class:
major
Intron Phase:
Intron Coordinates:
4456780 - 4457972
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTAAG
5'SS Class:
major
3'SS Sequence:
GTCTCCTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
68.8
43.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.7
0.47
0.8
65.1
30.7
Minor 5ss
30.1
-2.3
2.4
26.1
36.1
Minor BPS
66.4
0.49
1.6
75.77
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021078
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020280
4456052 - 4458131
2080