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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4463856_4485145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4463856 - 4485145
Intron Length:
21290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTGTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGATGTTCATT
Flanking Amino Acid:
MSTQGGEPEMDDCL
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
69.5
0.44
1.1
74.6
33.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
45
-0.3
2.4
67.41
44.2

Associated Gene:

Gene:
CARD11
Ensembl Gene ID:
ENSAPLG00000003700
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038287
4463730 - 4507255
43526