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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4560979_4561541_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4560979 - 4561541
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
LDNLDRIGQLNYFPSKQDIL
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
GNA12
Ensembl Gene ID:
ENSAPLG00000003620
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003703
4526988 - 4562111
35124