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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4603761_4603973_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4603761 - 4603973
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCGACATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
TCTTCCGACATT
Flanking Amino Acid:
PVAGNQYNKEDTTAKLQDIL
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
66.3
0.37
0.9
63.4
37.6
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
45
-0.3
2.6
70.75
46.9

Associated Gene:

Gene:
BRAT1
Ensembl Gene ID:
ENSAPLG00000003300
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003374
4603029 - 4610612
7584