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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4609083_4609173_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4609083 - 4609173
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
MLADLLLNMSRSPVFCDTEG
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
BRAT1
Ensembl Gene ID:
ENSAPLG00000003300
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003374
4603029 - 4610612
7584