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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4609547_4610464_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4609547 - 4610464
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCTTCCACT
Flanking Amino Acid:
QPALHFLCNSEGLDVIFTLQ
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.9
0.63
0.9
73.2
36.4
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
56.8
0.29
2
81.65
39.9

Associated Gene:

Gene:
BRAT1
Ensembl Gene ID:
ENSAPLG00000003300
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003374
4603029 - 4610612
7584