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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4612028_4613162_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4612028 - 4613162
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGTTTATTT
Flanking Amino Acid:
AGEAAAEGQLGDDSLSVITC
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
74.8
35.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.1
0.7
0.9
73.1
41.8
Minor 5ss
32.7
-2
3.1
39.8
40.4
Minor BPS
53.7
0.19
2
74.92
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833