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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4613877_4614242_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4613877 - 4614242
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AACTTCTTAACG
Flanking Amino Acid:
RILHKPPKSPKSPYSSSTQL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.6
0.76
0.8
84.5
30.4
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
70.9
0.52
1.3
66.52
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833