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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4614384_4614675_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4614384 - 4614675
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAGTA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TATCCCTGACTT
Flanking Amino Acid:
RQMWLGSLKQGVSHPLKSDV
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
69.7
34.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.8
0.74
1
80.6
37
Minor 5ss
40.2
-1.1
3.4
56
48.1
Minor BPS
56.7
0.29
1.8
75.86
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833