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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4614808_4615801_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4614808 - 4615801
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACCCT
5'SS Class:
major
3'SS Sequence:
ACCTTTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCAGATCT
Flanking Amino Acid:
KPKHSRSSSNGYIPGTPDYK
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
61.3
43.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.8
0.51
0.9
69
36.4
Minor 5ss
40
-1.1
3.2
54.3
43.9
Minor BPS
53.3
0.18
2
81.67
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833