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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4615873_4616629_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4615873 - 4616629
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
CCTCCTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTCTCTGAAATG
Flanking Amino Acid:
MYDEIIELKKTIQAQKNEGD
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
78.9
0.65
0.7
76.7
25.3
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
44.1
-0.5
2.3
50.88
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833