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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4616744_4618685_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4616744 - 4618685
Intron Length:
1942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATTATTT
Flanking Amino Acid:
QIEQLLDPSKCSELARALSE
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
86.9
30.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
41.8
-0.9
2.9
59.7
44.8
Minor BPS
57.7
0.32
2
80.9
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833