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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4619323_4619535_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4619323 - 4619535
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGACTT
5'SS Class:
major
3'SS Sequence:
CTTCTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
QQCKEKDNAINKFQSDLKTN
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
70.9
39.1
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
82.9
0.74
0.7
81.4
29.4
Minor 5ss
45.7
-0.5
3.1
65.8
39.4
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833