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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4620082_4622597_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4620082 - 4622597
Intron Length:
2516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTTTC
5'SS Class:
major
3'SS Sequence:
GACTCTTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTAAGTTAACT
Flanking Amino Acid:
LLAKSETMRKNTEGRDTQKR
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77.7
31.3
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
66.6
0.37
1.1
63.6
41.7
Minor 5ss
59
0.3
2.2
70
34.4
Minor BPS
60.2
0.4
2.3
85.99
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833