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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4622756_4623262_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4622756 - 4623262
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTGTGTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCCTGCTTAAAG
Flanking Amino Acid:
STSLASNKTKNYSEWSKQRL
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.8
35.1
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
81.3
0.7
0.9
81.2
36.5
Minor 5ss
35.6
-1.6
3.5
49.9
40.8
Minor BPS
54.7
0.01
2
60.06
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833