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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4623319_4623627_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4623319 - 4623627
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTATATAAATT
Flanking Amino Acid:
LVRRILELEKKLGAMENTRV
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83
0.74
0.7
81.7
30
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
48.7
-0
1.9
70.19
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833