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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4630507_4631482_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4630507 - 4631482
Intron Length:
976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTGGT
5'SS Class:
major
3'SS Sequence:
GATTACTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTCTTTGATC
Flanking Amino Acid:
PHNMHSLGKTNSCMSRVSNS
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
69.4
41.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.3
0.55
0.9
66.6
39.9
Minor 5ss
35
-1.7
3.3
50.1
46.2
Minor BPS
73.6
0.73
1.1
76.92
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833