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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4631614_4632341_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4631614 - 4632341
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTAATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TGTTCTGTACTA
Flanking Amino Acid:
HLARAVLLEERPFVSSATSE
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
79.8
0.67
0.9
73.3
41.5
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
49
-0
2.2
67.25
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003199
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003272
4611986 - 4635818
23833