About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4682928_4691233_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4682928 - 4691233
Intron Length:
8306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCTTTTTTACCT
Flanking Amino Acid:
WCVIIATLVCSAGIAVGFYG
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.6
0.76
0.8
77.7
30.8
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
62
0.46
1.6
75.46
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017182
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040774
4644921 - 4711109
66189
ENSAPLT00000032446
4644921 - 4711109
66189
ENSAPLT00000020985
4644921 - 4712199
67279