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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4692477_4695933_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4692477 - 4695933
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
GCTTCTACATCT
Flanking Amino Acid:
AIQIDLYDWYRVCLLGVFAL
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
82.2
30
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
79.3
0.66
0.8
72.8
32.1
Minor 5ss
39
-1.2
2.7
51.8
44.8
Minor BPS
45.8
-0.2
2
65.81
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017182
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032446
4644921 - 4711109
66189