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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_4696007_4696366_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4696007 - 4696366
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTGTCTTGTCT
Flanking Amino Acid:
SLGLELAVAVGSSDFCINPD
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
68.5
0.42
0.9
61.8
39.9
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
46.7
-0.1
3.5
82.19
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017182
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040774
4644921 - 4711109
66189
ENSAPLT00000032446
4644921 - 4711109
66189
ENSAPLT00000020985
4644921 - 4712199
67279